PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031625-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 293aa    MW: 32938.1 Da    PI: 4.7166
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031625-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-071222446
                      HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                      W+ Ia+ ++ gRt++++k++w++
  PSME_00031625-RA  1 WSQIAASLP-GRTDNEIKNYWNT 22
                      *********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.2E-6133IPR009057Homeodomain-like
CDDcd001671.94E-5122No hitNo description
PROSITE profilePS5129415.538128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-10125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
WSQIAASLPG RTDNEIKNYW NTCIKKNKKL KHLSADFSTK SNITSQSDRN CNINSASTHL  60
ARDTFRIFHS AEPFLDAMPE MFYSEPTIKT MDLGSSSVEK QYSSVDLDQN QFSIGPDSSN  120
NQLISDSPMW IDSNSTQTLH EIGDSLKEKL KINACSTQAA GITFLEDQNY ESLPEKSSHQ  180
SWPGHNSCSQ FNKPSFIWAA GFDQFCKVQS EADRDGYKDP LNSRYGEVNL GVPLNVNLRR  240
QKSDQLSQIG GGDQWNITQS LTRDGSGALE FECEDSADQL TFWPQEPYVQ SPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-10myb domain protein 55